Agreed, it was BOSS who started all this in the 70s just to force you to have to buy their adapters too. While I do think that the barrel type of plugs are way better than any 3,5 mm or lesser "mini tele plug" there's a less risk of noise when plugging and unplugging with barrel types. The jack in the pedal was normally secured right to the box, which also dictated the wiring – as the box itself is ground, the sleeve of the jack/plug had to be negative. Because the metal neck and nut of the jack is connected to ground, you can sometimes see sparks when inserting the plug...
now is that a good thing?
But as for the center negative, I think it has to do with how all the pedal box are earthed grounded too. And the battery as already explained. The adapter jack also needs to switch out the battery positive wire (to disconnect the battery when you insert a plug in the jack), and since the DC/barrel type jack has the switch on the sleeve/barrel connection, that’s where Boss wired the positive. There are pedals where the jack is wired center positive – again, not ”positive tip” – and some of them need their own separate power source (because they are positive ground!).
Some manufacturers earths and grounds their chassis, but it is making the assumption that they're all made of some kind of steel. Plastic boxes must have different kinds of "schematics" to provide this, and it can both be connected to the power plug or not. I am not sure, but I think I've heard that with some pedals, while disconnecting, there's not as much hazard present, and if you change power plugs while the input and output are still active, no noise is heard, and if you have batteries in it, they will turn on active again. If you happen to not have plugged all the way in to the jack, there's less that can happen, in the hum/noise department. But I am not sure of this, since it is very dependent on the rest of the pedals construction anyway. It can be different for different pedals.
I do think, that from the start on, it had to do with disconnecting the onboard battery, and run it on power adaptors. I e that the battery became active when you plugged into input jack, and disconnected if there ever was a power adapter jacked in at the dc power jack. If you use both, it was better on having the center negative. On a pedal that can't be run on any batteries at all, it's kind of "doesn't matter".