This is all gone sideways.
For relief, invest in a set of feeler gauges you can get at any auto parts store.
1) Tune the bass
2) Put a capo on the first fret
3) Hold the E-string down with your right hand at the 17th, then
4) Measure the clearance over the 12th fret (around .012" of an inch is a good target)
Then use your steel rule for these string heights:
After you've gotten the relief done, THEN set your string heights over the last fret of the fingerboard, following the curve / radius of the fingerboard. A good general target is 5/64" for the E-string letting down just a bit across all 4 strings to 4/64" on the G-string.
You'll want to do this anytime you go to a different gage or style of string. And when you do go to something different, adjust your string lengths on the saddles so you play in tune up the neck.
You'll have to do the English-Metric conversions for those measurements.
From the pictures, the strings were very high, if I'm looking at them correctly.
IF you DON'T know how to do this, take it to a QUALIFIED guitar technician. Wherever you are, find out who the real players, the guys that make their living playing, take their guitars. It should be someone who has their own standalone business, or possibly partnered with a good music store. He may be a warranty station for brands of guitars. DON'T waste your time with somebody's 'brother in law that works on guitars' or some kid at Guitar Center. Find a real guitar tech, pay what he asks and get this straight. If there's some other problem at work here (entirely possible), he'll find it.
Here's a great workaround from Fender themselves, and a lot of this can apply to a lot of different basses:
How do I set up my bass guitar properly?
I'm not one of those guys to measure it with a credit card or guitar picks. I want numbers I can repeat from bass to bass: Then I know where I'm at.