Here, I'll do the math for you:
On your Option 1 guitar 25.5" scale, 22 fret, the end of the fingerboard is at the 23rd fret position. Therefore the distance from the bridge Zero line to the front side of the neck pickup is 25.5-18.746=6.754".
On your Option 2 guitar 25.5" scale, 24 fret, the end of the fingerboard is at the 25th fret position. Therefore the distance from the bridge Zero line to the front side of the neck pickup is 25.5-19.483=6.017".
So, those are the fixed functional lengths of those two bodies, assuming that you are keeping them unchanged. Yes, the 24 fret body is shorter in length, so on any custom neck you build for it, the fingerboard will be longer.
Now, if you build custom 24" scale necks to fit those bodies, keeping the bridge and neck pocket positions the same, you'll get:
On the Option 1 22 fret body, the fingerboard will be 24.0"-6.754"=17.246". On a 24" scale neck, the 22nd fret is at 17.265", so your heel end would be just shy of that. Therefore, that neck would have 21 frets.
On the Option 2 24 fret body, the fingerboard will be 24.0"-6.017"=17.983". That's just shy of the 24th fret position (18.000"), so that would end up as a 23 fret neck.
Do you see how that works?
If you play around with scale lengths in the range of 23" to 25", you'll get approximately the same result on both instruments: You'll lose one fret as compared to the 25.5" scale neck.
Yes, thanks for explaining this. Keith has been working on a custom medium scale neck for me, and from what I've seen in pictures he's done a spectacular job. Thanks for all your help and advice.